As atividades desenvolvidas pelo laboratório empregam softwares estabelecidos internacionalmente, destacando-se os modelos:

• HEC-RAS: River Analysis System (Us Army Corps of Engineers, 2008)
• SWAT: Soil and Water Assessment Tool (Neitsch et al. 2005)
• QUAL-2K: River and Stream Water Quality Model (Chapra et al. 2007)
• SWAP: Soil–Water–Atmosphere–Plant (van Dam et al., 1997)